BLISS (Bioinformatics LearnIng and Study Session)

FALL, 2003    [System Biology Class Talk List]

Dec. 3rd, 2003, (Wednesday, 5pm)    Modeling and analyzing biochemical systems (Presenter: Venkatesh P. Mysore) [Slides] 
                                    Measuring tumor angiogenesis (Presenter: Lee-Ad Gottlieb) [Slides]

Nov. 26th, 2003, (Wednesday, 5pm)    Population genetics and haplotyping (Presenter: Iluliana Ionita) [Slides] 
                                     Introduction of MHC and Immunology (Presenter: Kung-Yen Chang) [Slides] [References]

Nov. 19th, 2003, (Wednesday, 5pm)    Genetic Circuits and Analysis (Presenter: Jiawu Feng) [Slides] 
                                     Cellular Mechanismand Modeling in Learning and Memory (Presenter: PilHwa Lee) [Slides]

Nov. 12th, 2003, (Wednesday, 5pm)   Stochasticity in Gene Expression (Presenter: Arjun Raj) [Slides] [References]

Nov. 5th, 2003, (Wednesday, 5pm)    Sequence Alignment (Presenter: Ofer Gill) [Slides]   [Align Results]

Oct. 29th, 2003, (Wednesday, 5pm)    Physical Modeling of DNA Hybridization (Presenter: Dr.Vera Chrepinsky) [Slides] 
                                     Genomic DNA Copy Number Fluctuation in Cancer Cell Lines (Presenter: Dr.Archisman Rudra & Dr.Raoul-Sam Daruwala) [Slides]

Oct. 22th, 2003, (Wednesday, 5pm)    Genetic Regulatory Network (Presenter: Prof.Bud Mishra)

Oct. 15th, 2003, (Wednesday, 5pm)    Introduction to physical properties of nucleotides (Presenter: Bing Sun) [Slides]  [References]
                                     More about Luria-Delbruck model (Presenter: Matthias Heymann) [Slides]  [References]

Oct. 8th, 2003, (Wednesday, 5pm)    More about stem cells (Presenter: Joey Zhou) [Slides]  [References]

Oct. 1st, 2003, (Wednesday, 5pm)    Introduction to stem cells (Presenter: Marina Spivak) [Slides]  [References]


SPRING, 2003

July 14th, 2003, (Monday, 12:15pm))    Bisimulation II (Presenter: Carla Piazza)

July 10th, 2003, (Thursday, 3pm))    Bisimulation I (Presenter: Carla Piazza) [Slides]

July 3rd, 2003, (Thursday, 11am)    Genomic copy number fluctuation (Presenter: Joey Zhou)

June 26th, 2003, (Thursday, 11am)    Biological circuits (Presenter: Jiawu Feng)

June 19th, 2003, (Thursday, 11am)    Introduction to genome evolution II (Presenter: Joey Zhou)

June 12th, 2003, (Thursday, 11am)    Introduction to genome evolution I (Presenter: Joey Zhou) [Slides]

June 5th, 2003, (Thursday, 11am)    Introduction to Model Checking (3) (Presenter: Bud Mishra)

May 29th, 2003, (Thursday, 11am)    Apoptosis, or why you cannot enter the same river twice (Presenter: Yuri Lazebnik, CSHL) [Slides]

May 22th, 2003, (Thursday, 11am)    Introduction to Model Checking (2. Symbolic model checking) (Presenter: Bud Mishra)

May 16th, 2003, (Friday, 11am)    Application of Model Checking to Biological Systems (Demo on Simpathica) (Presenter: Marco Antoniotti)

May 1st, 2003, (Thursday, 11am)    Introduction to Model Checking (1. Basic temporal logic definitions and semantics) (Presenter: Bud Mishra)  [Reference] [Slides]