publications.bib

@INPROCEEDINGS{mishra02:opt_map_EHG,
  AUTHOR = {B. Mishra},
  TITLE = {Optical Mapping},
  BOOKTITLE = {Encyclopedia of the Human Genome},
  PUBLISHER = {Nature Publishing Group, Macmillan Publishers Ltd},
  YEAR = 2002,
  ADDRESS = {London, UK}
}


@INPROCEEDINGS{mishra02:xS_sys_2002,
  AUTHOR = {B. Mishra and M. Antoniotti and A. Policriti and N. Ugel},
  TITLE = {{xS}-Systems: {eXtended} {S-systems} and Algebraic Differential Automata for Modelling Cellular Behaviour},
  BOOKTITLE = {International Conference On High Performance Computing},
  YEAR = 2002,
  MONTH = 12,
  ADDRESS = {Bangalore, India}
}


@INPROCEEDINGS{mishra02:symb_mod,
  AUTHOR = {B. Mishra},
  TITLE = {A symbolic approach to modelling cellular behaviour},
  BOOKTITLE = {International Conference On High Performance Computing},
  YEAR = 2002,
  MONTH = 12,
  ADDRESS = {Bangalore, India}
}


@ARTICLE{mishra02:_random_walk_down_genom,
  AUTHOR = {B. Mishra and  S. Paxia and A. Rudra and Y. Zhou},
  TITLE = {{A Random Walk Down the Genomes: DNA Evolution in VALIS}},
  JOURNAL = {Computer},
  YEAR = 2002,
  VOLUME = 35,
  NUMBER = 7,
  PAGES = {73-79},
  MONTH = 7
}


@ARTICLE{mishra02:_wild_natur,
  AUTHOR = {M. Wigler and B. Mishra},
  TITLE = {Wild by Nature},
  JOURNAL = {Science},
  YEAR = 2002,
  VOLUME = 296,
  PAGES = {1407-1408},
  MONTH = 5,
  DAY = 24
}


@ARTICLE{mishra02:compar_genom,
  AUTHOR = {B. Mishra},
  TITLE = {Comparing Genomes},
  JOURNAL = {Computing in Science and Engineering},
  YEAR = 2002,
  PAGES = {42-49},
  MONTH = {1/2},
  NOTE = {Special issue on "Biocomputation"}
}


@ARTICLE{mishra01:opt_map_ecoli,
  AUTHOR = {B. Mishra and A. Lim et al.},
  TITLE = {Shotgun Optical Maps of the Whole Escheria coli 0157:h7 Genome},
  JOURNAL = {Genome Research},
  YEAR = 2001,
  VOLUME = 11,
  NUMBER = 9,
  PAGES = {1584-1593}
}


@INPROCEEDINGS{mishra01:probes_distan_data,
  AUTHOR = {B. Mishra and  M. Wigler and W. Casey},
  TITLE = {Placing Probes along the Genome using Pair-wise Distance Data},
  BOOKTITLE = {Algorithms in Bioinformatics: First International Workshop},
  PAGES = {52-68},
  YEAR = 2001,
  NUMBER = 2149,
  SERIES = {LNCS},
  PUBLISHER = {Springer-Verlag}
}


@INPROCEEDINGS{mishra01:opt_map_validation,
  AUTHOR = {B. Mishra and  T.S. Anantharaman},
  TITLE = {A Probablistic Analysis of False Positives in Optical Map Alignment and Validation},
  BOOKTITLE = {Algorithms in Bioinformatics: First International Workshop},
  PAGES = {27-40},
  YEAR = 2001,
  NUMBER = 2149,
  SERIES = {LNCS},
  PUBLISHER = {Springer-Verlag}
}


@ARTICLE{mishra00:microarray,
  AUTHOR = {B. Mishra and  R. Lucito et al.},
  TITLE = {Detecting Gene Copy Number Fluctuations in Tumor Cells by Microarray Analysis of Genomic Representations},
  JOURNAL = {Genome Research},
  YEAR = 2000,
  VOLUME = 10,
  NUMBER = 1,
  PAGES = {1726-1736}
}


@ARTICLE{mishra00:y_chromo,
  AUTHOR = {B. Mishra and  J. Giacalone et al.},
  TITLE = {Optical Mapping of BAC Clones from the Human Y Chromosome DAZ Locus},
  JOURNAL = {Genome Research},
  YEAR = 2000,
  VOLUME = 10,
  NUMBER = 9,
  PAGES = {1421-1429}
}


@ARTICLE{mishra00:singlemoleculemaps,
  AUTHOR = {B. Mishra and L. Parida},
  TITLE = {Partitioning Single-Molecule Maps into Multiple Populations: Algorithms And Probablistic Analysis},
  JOURNAL = {Discrete Applied Mathematics (The Computational Molecular Biology Series)},
  YEAR = 2000,
  VOLUME = 104,
  NUMBER = {1-3},
  PAGES = {203-227},
  MONTH = 8
}


@ARTICLE{mishra99:shotgun_plasmodium,
  AUTHOR = {B. Mishra and Z. Lai et al.},
  TITLE = {A Shotgun Sequence-Ready Optical Map of the Whole Plasmodium falciparum},
  JOURNAL = {Nature Genetics},
  YEAR = 1999,
  VOLUME = 23,
  NUMBER = 3,
  PAGES = {309-313}
}


@ARTICLE{mishra99:optPCR,
  AUTHOR = {B. Mishra and J. Skiadas et al.},
  TITLE = {Optical PCR: Genomic Analysis by Long-Range PCR and Optical Mapping},
  JOURNAL = {Mammalian Genome},
  YEAR = 1999,
  VOLUME = 10,
  PAGES = {1005-1009}
}


@ARTICLE{mishra99:shotgun_deino,
  AUTHOR = {B. Mishra and J. Lin et al.},
  TITLE = {Whole Genome Shotgun Optical Mapping of Deinococcus radiodurans},
  JOURNAL = {Science},
  YEAR = 1999,
  VOLUME = 285,
  NUMBER = 5433,
  PAGES = {1558-1562}
}


@ARTICLE{mishra99:opt_map_large_scale_seq,
  AUTHOR = {B. Mishra and  C. Aston and D.C. Schwartz},
  TITLE = {Optical Mapping and Its Potential for Large-Scale Sequencing Projects},
  BOOKTITLE = {Trends in Biotechnology},
  PAGES = {297-302},
  YEAR = 1999,
  VOLUME = 17
}


@INPROCEEDINGS{mishra99:genom_optic_mappin_iii,
  AUTHOR = {B. Mishra and  T.S. Anantharaman and D. Schwartz},
  TITLE = {Genomics via Optical Mapping III: Coniging Genomic DNA and Variations},
  BOOKTITLE = {Proceedings 7th Intl. Cnf. on Intelligent Systems for Molecular Biology: ISMB '99},
  PAGES = {18-27},
  YEAR = 1999,
  VOLUME = 7
}


@ARTICLE{mishra99:opt_map_plas_falci,
  AUTHOR = {B. Mishra and J. Jing et al.},
  TITLE = {Optical Mapping of Plasmodium falciparum Chromosome 2},
  JOURNAL = {Genome Research},
  YEAR = 1999,
  VOLUME = 9,
  PAGES = {175-181}
}


@INPROCEEDINGS{mishra98:k_clones,
  AUTHOR = {B. Mishra and L. Parida},
  TITLE = {Partitioning K Clones: Inapproximability Results and a Practical Solution to the K-Populations Problem},
  BOOKTITLE = {Proceedings of the Second Annual Conference on Computational Molecular Biology},
  VOLUME = {RECOMB 98},
  PAGES = {192-201},
  YEAR = 1998
}


@INPROCEEDINGS{mishra98:opt_mapping_fluid_dna,
  AUTHOR = {B. Mishra and J. Jing et al.},
  TITLE = {Automated High Resolution Optical Mapping Using Arrayed, Fluid Fixated DNA Molecules},
  BOOKTITLE = {Proc. National Academy of Science},
  PAGES = {8046-8051},
  YEAR = 1998,
  VOLUME = 95
}


@INPROCEEDINGS{mishra98:high_res_rest_maps,
  AUTHOR = {B. Mishra and W. Cai et al},
  TITLE = {High Resolution Restriction Maps of Bacterial Artificial Chromosomes Constructed by Optical Mapping},
  BOOKTITLE = {Proc. National Academy of Science},
  PAGES = {3390-3395},
  YEAR = 1998,
  VOLUME = 95
}


@ARTICLE{mishra97:opt_mapping,
  AUTHOR = {B. Mishra and  T.S. Anantharaman and D.C. Schwartz},
  TITLE = {Genomics via Optical Mapping II: Ordered Restriction Maps},
  JOURNAL = {Journal of Computational Biology},
  PAGES = {91-118},
  YEAR = 1997,
  VOLUME = 4,
  NUMBER = 2
}