Salvatore Paxia

NYU Bioinformatics Group,
715 Broadway, Rm 1004
New York, NY 10012

Phone: 212 998 3470
Italian Number (in NYC):
(+39) 06 452 217 601
Fax: 212 998 3484
e-mail:paxia [at] cs.nyu.edu

Current Projects

I am currently involved with several projects at the NYU bioinformatics group.

Books:

Simpathica: A Computational Systems Biology Tool within the Valis Bioinformatics Environment (with M. Antoniotti, B. Mishra and N. Ugel), Computational Systems Biology, (Ed. E. Eiles and A. Kriete), Elsevier, 2005.
Programming in SETL (Draft in progress) with Jack Schwartz

Papers:

A Random Walk down the Genomes: DNA Evolution in Valis.

Salvatore Paxia, Archisman Rudra, Yi Zhou, Bud Mishra. IEEE Computer, 35 (7):73--79, July, 2002.
A Different Manhattan Project: Automatic Statistical Model Generation.

Chee Yap, Henning Biermann, Aaron Hertzmann, Chen Li, Jon Meyer, Hsing-Kuo Pao, Salvatore Paxia. Proc. SPIE Visualization and Data Analysis 2002.
Recent Advances in the NYU Autostereoscopic Display.

K. Perlin, C. Poultney, J. Kollin, D. Kristjansson, S. Paxia. Proceedings of the SPIE, Vol. 4297. San Jose, California. January 22-24, 2001.
An Autostereocopic Display.

Ken Perlin, Salvatore Paxia, Joel Kollin. Computer Graphics, Vol 33 No. 3, 2000.
A shotgun optical map of the entire Plasmodium falciparum genome.

Lai, Z., Jing, J., Aston, C., Clarke, V., Apodaca, J., Dimalanta, E., Carucci, D. Gardner, M., Mishra, B., Anantharaman, T., Paxia, S., Hoffman, S., Venter, J., Huff, E., Schwartz, D.C. Nature Genetics 23: 309-313, 1999.

Patents:

U.S. Patent no. 6,598,131
Data Image Management Via Emulation of a Non-Volatile Storage Device, July 22,2003
U.S. Patent no. 6,477,624
Data Image Management Via Emulation of a Non-Volatile Storage Device, September 5,2002
U.S. Patent no. 7,239,293
Autostereoscopic Display, July 3, 2007

Abstracts and Posters:

Detecting and Modeling Long Range Correlation in Genomic Sequences,

Yi Zhou, Archisman Rudra, Salvatore Paxia, Bud Mishra. International Conference on Complex Systems (ICCS2002), Nashua, NH, June 9-14, 2002. Organized by New England Complex System Institute.
Genome Evolution Models, Gene Grammar and VALIS Genome Analysis Tool,

Yi Zhou, Archisman Rudra, Salvatore Paxia and Bud Mishra. 15th annual meeting on Genome Sequencing & Biology, Cold Spring Harbor Lab, Long Island, May 2002.
Goals, Design, and Implementation of a Versatile MicroArray Data Base

Marc Rejali, Marco Antoniotti, Vera Cherpinsky, Caroline Leventhal, Salvatore Paxia, Archisman Rudra, Joe West and Bud Mishra. Ninth DOE Genome Contractor and Grantee Workshop, Oakland, CA, January 2002.
A Random Walk Down the Genomes: a Case Study of DNA Evolution in VALIS

Yi Zhou, Archisman Rudra, Salvatore Paxia and Bud Mishra. Ninth DOE Genome Contractor and Grantee Workshop, Oakland, CA, January 2002.
Algorithms and Analysis for Combining Sequences and Maps: Application to the Malaria Parasite

Antoniotti M, Anantharaman T, Chang C-W, Colinas J, Paxia S, Schwartz DC, Mishra B. WABI 2001, 1st Workshop on Algorithms in BioInformatics, Poster Volume, 26-28